Calypso Hierarchy Details

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Dendogram

Taxonomic tree presented as dendogram. The branch width describes the relative abundance of taxa. If sample plots is selected, bar plots are included for each taxon. Subtrees can be hidden or expanded by clicking on nodes.

Radial tree

Taxonomic tree presented as radial tree. The branch width describes the relative abundance of taxa. If sample plots is selected, bar plots are included for each taxon.

Network

Correlations (Pearson correlation) between features (taxa) are presented as networks. Taxa with a Pearson correlation above Edge Min Similarity or below -1 * Edge Min Similarity are connected by an edge. Positive correlations are displayed in yellow, negative correlations in blue. Select "Layout By Correlation" to layout nodes based on a PCoA. Network analysis identifies co-occurring and mutual exclusive features and clusters of correlating features. The nodes can be colored by the taxonomy by the parents in the taxonomic hierarchy.

Network+

Correlations (Pearson correlation) between features (taxa) and factors are presented as networks. Taxa with a Pearson correlation above Edge Min Similarity or below -1 * Edge Min Similarity are connected by an edge. Positive correlations are displayed in yellow, negative correlations in blue. Select "Layout By Correlation" to layout nodes based on a PCoA. Network analysis identifies co-occurring and mutual exclusive features and clusters of correlating features. The nodes can be colored by the taxonomy by the parents in the taxonomic hierarchy.